Broad Range of SGI Solutions to Help National Cancer Institute Solve Demanding Biological Research Problems
25 10월 2005 - 11:01PM
PR Newswire (US)
256-Processor SGI Altix Supercomputer and World's Largest Silicon
Graphics Prism Visualization System Among New Resources Serving
Nation's Leading Biomedical Researchers MOUNTAIN VIEW, Calif., Oct.
25 /PRNewswire-FirstCall/ -- Silicon Graphics (NYSE:SGI) and
SCICOR, an authorized SGI Solution Provider, today announced that
the National Cancer Institute's Advanced Biomedical Computing
Center (ABCC) in Frederick, Md., has purchased from SCICOR a broad
range of SGI(R) high-performance computing, visualization, and data
storage solutions to help solve some of the most demanding
biological research problems, including bioinformatics, proteomics,
imaging, and computational biology and chemistry. ABCC supports
National Cancer Institute (NCI) and National Institutes of Health
(NIH) research in such grand challenge areas as deciphering the
human genome, understanding structure-function relations of
biological molecules, and the development of therapeutics for
numerous diseases, particularly AIDS and cancer. Scientists at NCI,
NIH, and extramural biomedical researchers can now match their
specific problem needs to the appropriate SGI hardware platforms.
Such a diversity of SGI systems at ABCC allows applications to be
configured for the most appropriate machine in terms of utility and
efficiency. "NCI's supercomputing center is a world-class
bioinformatics resource for molecular biologists, providing
computational tools for a complete range of biological research
problems, from primary sequence determinate to molecular modeling
and gene linkage analysis," said Frank Meier, president of SCICOR,
a solutions provider that specializes in the biomedical and life
sciences. "The combination of SGI's high-performance computing,
advanced visualization and data storage solutions will prove to be
an invaluable and integrated resource for performing a diverse set
of very complex research tasks. Together, these SGI solutions
represent a dynamic analysis environment designed to tackle some of
the most compute-intensive biomedical research problems and to
provide the breakthroughs that NCI scientists have been working
towards for years." The dramatic growth of its databases has forced
ABCC to address increasingly complex user queries, which have
required additional processor power, memory, and data storage
capacity. In order to address these growing demands, ABCC has
purchased an SGI(R) Altix(R) 3700 supercomputer, powered by 256
Intel(R) Itanium(R) 2 processors and running the open-source
Linux(R) operating system, which will serve as an important
scientific computational resource that is part of a growing list of
SGI servers at the center. ABCC researchers depend on the Altix
systems' scalability and their ability to handle large memory
problems, such as modeling anti-cancer drug interactions with known
tumor targets or analyzing genomic/proteomic data. To increase its
data storage capacity, ABCC has purchased a 50TB SGI(R)
InfiniteStorage Total Performance 9700 (TP9700) RAID storage array,
the industry's first Fibre Channel storage array equipped with
4Gb/second interfaces, to operate with SGI(R) InfiniteStorage
CXFS(TM) shared filesystem and SGI(R) InfiniteStorage Data
Migration Facility (DMF). ABCC had already been using CXFS to share
data within its Storage Area Network, enhancing workflow and
reducing costs by eliminating file duplication and the time it
takes to move large files over the network. However, this is the
first deployment at the supercomputing center of DMF, which
automates ABCC's data management policies allowing them to
seamlessly adapt to changing data access patterns by transparently
migrating files from online storage to near-line storage based on
level of access needed. Manipulation of larger and larger DNA
sequences and sets of DNA sequences is a growing requirement at
ABCC. To bolster its visualization capabilities that are so
critical to its data analysis, ABCC will convert an existing
64-processor SGI Altix server into a 64-processor Silicon Graphics
Prism(TM) -- the first truly scalable Linux visualization system --
making it the world's largest Prism system of its kind anywhere.
With the help of an existing Silicon Graphics Prism visualization
system, ABCC recently won a "Best Practices Award for Knowledge
Management" from Bio-IT World. ABCC's Silicon Graphics Prism
visualization system accelerated the efficiency and workflow for
microscopy scientists, providing efficient analysis of large
datasets, and presenting results of several test cases on
microscopy samples provided by NCI for evaluation. On the software
visualization front, ABCC uses MineSet(TM) to perform genome
sequence comparisons. Introduced by SGI in 1999, MineSet is a suite
of powerful yet easy-to-use software tools for Visual Data Mining
and Data Visualization. It distils complex information into
accessible and easily understood interactive 3D real-time graphics
to help users quickly identify trends and patterns in their data.
Purple Insight has licensed development, support and distribution
rights for MineSet from SGI. ABCC has also purchased an SGI(R)
Reality Center(R), an immersive visualization environment ideally
suited for cross functional teams like those at NCI and NIH that
need to collaborate, enabling project teams to take a
multi-disciplinary approach to their biomedical research. The
Reality Center was chosen for its high-performance graphics and
stereoscopic visualization capabilities, which will allow a high
level of interactivity with very large visual data sets, such as
large molecules, and will greatly enhance the speed of the
decision-making process between cross-collaborative scientific
teams. About ABCC The National Cancer Institute's computing
facility is a fully integrated, high-performance, scientific
computing resource located in Frederick, Md. Organizationally
identified as the Advanced Biomedical Computing Center, the
facility is operated by SAIC-Frederick and provides
state-of-the-art computing support and technology to the scientists
of the NCI, the National Institutes of Health (NIH) and extramural
biomedical researchers. NIH and NCI have identified
high-performance computing as an important area for biological
research. The ABCC was established in 1986 by NCI to provide a
high-performance computing and user-friendly environment for
biomedical research. Unlike some other high-performance centers,
ABCC only supports research directed toward biological problems.
About SCICOR SCICOR, one of SGI's largest Solution Providers has
consistently attained Platinum status while increasing its sales of
SGI products year after year. SCICOR has specialized in high
performance computing for the biomedical and life sciences in both
the commercial and federal marketplaces. Towards this end, SCICOR
has been instrumental in helping the National Institutes of Health
with its invaluable scientific research. About Purple Insight
Founded in 2003, Purple Insight is the premiere provider of
business data visualization solutions serving large enterprises
with reliable, innovative insight that enables better business
decisions. Its flagship product, MineSet, distills complex
information into readily accessible and easily understood graphics.
To find out more about visual mining, please visit
http://www.purpleinsight.com/. SILICON GRAPHICS | The Source of
Innovation and Discovery(TM) SGI, also known as Silicon Graphics,
Inc., is a leader in high-performance computing, visualization and
storage. SGI's vision is to provide technology that enables the
most significant scientific and creative breakthroughs of the 21st
century. Whether it's sharing images to aid in brain surgery,
finding oil more efficiently, studying global climate, providing
technologies for homeland security and defense, or enabling the
transition from analog to digital broadcasting, SGI is dedicated to
addressing the next class of challenges for scientific, engineering
and creative users. With offices worldwide, the company is
headquartered in Mountain View, Calif., and can be found on the Web
at http://www.sgi.com/. NOTE: Silicon Graphics, SGI, Altix, Reality
Center, XFS, the SGI cube and the SGI logo are registered
trademarks and Silicon Graphics Prism, CXFS and The Source of
Innovation and Discovery are trademarks of Silicon Graphics, Inc.,
in the United States and/or other countries worldwide. Intel and
Itanium are trademarks or registered trademarks of Intel
Corporation or its subsidiaries in the United States and other
countries. Linux is a registered trademark of Linus Torvalds in
several countries. All other trademarks mentioned herein are the
property of their respective owners. MEDIA CONTACT Marla Robinson
256-773-2371 SGI PR HOTLINE 650-933-7777 SGI PR FACSIMILE
650-933-0283 DATASOURCE: SGI CONTACT: Marla Robinson,
+1-256-773-2371, or , or SGI PR HOTLINE, +1-650-933-7777, or SGI PR
FACSIMILE, +1-650-933-0283, of SGI Web site:
http://www.purpleinsight.com/ Web site: http://www.sgi.com/
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